PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008391-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 431aa    MW: 48904.9 Da    PI: 5.3403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008391-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.4e-12221272155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A++++++L+
  WALNUT_00008391-RA 221 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIDFVRELE 272
                         79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-13219275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.37E-13219276No hitNo description
SuperFamilySSF474592.09E-16220285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.529220271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9221272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9226277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLYYSETEFL QAAFPSSFAG PDYPLDHHLH LHHQHEQQQF MKPRIGETSG DHDNNNGMVD  60
YLLSNPQHQQ PQIASGFCGS SSFDKLSFAD VMQFADFGTK LALNQTKISE DDQSGIDPVY  120
FLKFPVLNDK LEDRHLMINP QHGSADNHEE RFKRVGVEDE VRVLLGEEEG IREDEEARIS  180
ENTSVQLRFL GEDLQKNPTP EAKNKRKRPR TIKTSEEVES QRMTHIAVER NRRKQMNEHL  240
RVLRSLMPGS YVQRGDQASI IGGAIDFVRE LEQLLQCLES QKRRRLFGEA PRQVGAADSS  300
LAAQQPQPPF FPAASLPNDQ FNLLDFESGL REETAENKSC LADVEVKLLG FDAMIKILSR  360
RRTGQLIKAI AALEDLQLNI LHTNITTIEQ TVLYSFNVKV ATESRFTAED IASSVQQIFS  420
FIHQTAPCDV I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221232RMTHIAVERNRR
2281285KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045658.10.0PREDICTED: transcription factor FAMA isoform X1
SwissprotQ56YJ81e-152FAMA_ARATH; Transcription factor FAMA
TrEMBLB9GFX70.0B9GFX7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s32160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104893340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-139bHLH family protein